Here is a list of all functions, variables, defines, enums, and typedefs with links to the files they belong to:

- s -

• SanitiseUnknown() : hhalign_wrapper.c , hhalign_wrapper.h
• SEED_SELECTION : mbed.c
• SEED_SELECTION_TYPE : mbed.c
• SeedSelection() : mbed.c
• SELECT_SEEDS_BY_LENGTH : mbed.c
• SELECT_SEEDS_RANDOMLY : mbed.c
• SeqsAreAligned() : seq.c , seq.h
• SeqSwap() : seq.c , seq.h
• SeqToVec() : mbed.c
• SEQTYPE_DNA : seq.h
• SEQTYPE_PROTEIN : seq.h
• SEQTYPE_RNA : seq.h
• SEQTYPE_UNKNOWN : seq.h
• SeqTypeToStr() : seq.c , seq.h
• SequentialAlignmentOrder() : clustal-omega.h , clustal-omega.c
• SetAutoOptions() : clustal-omega.c
• SetDefaultAlnOpts() : clustal-omega.h , clustal-omega.c
• SetDefaultHhalignPara() : hhalign_wrapper.c , hhalign_wrapper.h
• SetLeafId() : muscle_tree.h , muscle_tree.c
• SetLeafName() : muscle_tree.c
• SHUFFLE_INPUT_SEQ_ORDER : clustal-omega.c
• ShuffleMSeq() : seq.h , seq.c
• SORT_INPUT_SEQS : clustal-omega.c
• SortAndTrackIndexCmpAsc() : util.c
• SortAndTrackIndexCmpDesc() : util.c
• SortMSeqByLength() : seq.h , seq.c
• STR_EQ : util.h
• STR_NC_EQ : util.h
• SymMatrixGetValue() : symmatrix.c , symmatrix.h
• SymMatrixGetValueP() : symmatrix.c , symmatrix.h
• SymMatrixPrint() : symmatrix.h , symmatrix.c
• SymMatrixRead() : symmatrix.h , symmatrix.c
• SymMatrixSetValue() : symmatrix.h , symmatrix.c