Here is a list of all functions, variables, defines, enums, and typedefs with links to the files they belong to:

- a -

• AddSeq() : seq.c , seq.h
• Align() : clustal-omega.c , clustal-omega.h
• AlignmentOrder() : clustal-omega.h , clustal-omega.c
• AlignProfiles() : clustal-omega.c , clustal-omega.h
• AliStat() : seq.c , seq.h
• ALLOW_ONLY_PROTEIN : seq.c
• AlnOptsLogicCheck() : clustal-omega.h , clustal-omega.c
• AlnToHHMFile() : clustal-omega.c
• AlnToHMM() : clustal-omega.c
• AlnToHMMFile() : clustal-omega.c
• AMINOACID_ANY : seq.h
• AppendBranch() : muscle_tree.c
• AppendTree() : muscle_tree.h , muscle_tree.c
• APPLY_BG_HMM_UP_TO_TREE_DEPTH : hhalign_wrapper.c
• AVG : muscle_upgma.c