src/clustal/weights.h File Reference

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Functions
int	CalcClustalWeights (double **pdWeights_p, tree_t *prTree)
	Calculate "Clustal" weights from a tree.

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Function Documentation

int CalcClustalWeights	(	double **	pdWeights_p,
		tree_t *	prTree
	)

Calculate "Clustal" weights from a tree.

FIXME see doc in muscle:clwwt.cpp

Parameters:

[out]	pdWeights_p	Will contain a weight for each leaf/sequence. Allocated here. User has to free
[in]	prTree	Tree to derive weights from

Returns:

0 on success, non-zero otherwise

Note:

Largely copied from Muscle3.7: clwwt.cpp:CalcClustalWWeights()

Warning:

FIXME Not sure if Muscle routines are most efficient here. Couldn't we do all this while traversing the tree and thereby safe time?