src/clustal/ktuple_pair.h File Reference

#include "seq.h"
#include "symmatrix.h"
#include "progress.h"

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Data Structures
struct	ktuple_param_t
Functions
void	KTuplePairDist (symmatrix_t *tmat, mseq_t *mseq, int istart, int iend, int jstart, int jend, ktuple_param_t *aln_param, progress_t *prProgress, unsigned long int *ulStepNo, unsigned long int ulTotalStepNo)

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Function Documentation

void KTuplePairDist	(	symmatrix_t *	tmat,
		mseq_t *	mseq,
		int	istart,
		int	iend,
		int	jstart,
		int	jend,
		ktuple_param_t *	param_override,
		progress_t *	prProgress,
		unsigned long int *	ulStepNo,
		unsigned long int	ulTotalStepNo
	)

Will compute ktuple scores and store in tmat Following values will be set: tmat[i][j], where istart <= i <iend and jstart <= j < jend i.e. zero-offset tmat data members have to be preallocated

if ktuple_param_t *aln_param == NULL defaults will be used