Clustal Omega: src/clustal/hhalign

00001 /*********************************************************************
00002  * Clustal Omega - Multiple sequence alignment
00003  *
00004  * Copyright (C) 2010 University College Dublin
00005  *
00006  * Clustal-Omega is free software; you can redistribute it and/or
00007  * modify it under the terms of the GNU General Public License as
00008  * published by the Free Software Foundation; either version 2 of the
00009  * License, or (at your option) any later version.
00010  *
00011  * This file is part of Clustal-Omega.
00012  *
00013  ********************************************************************/
00014 
00015 /*
00016  *  RCS $Id: hhalign_wrapper.h 266 2011-10-20 16:04:11Z andreas $
00017  */
00018 
00019 extern void
00020 SetDefaultHhalignPara(hhalign_para *prHhalignPara);
00021 
00022 
00023 extern double
00024 HHalignWrapper(mseq_t *mseq, int *piOrderLR,
00025                double *pdSeqWeights, int iNodeCount,
00026                hmm_light *prHMMList, int iHMMCount,
00027                int iProfProfSeparator, hhalign_para rHhalignPara);
00028 void
00029 SanitiseUnknown(mseq_t *mseq);
src/clustal/hhalign_wrapper.h
